YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7768477
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SYFMYINHGW CSYLGGLIFT SYVLIYSFAS IRISSFYSPA KVWGGAFLVY ILYSLAHVWV  60
   61 VAYEFVPGGP ILRERTSYIL IFIGWNLAAL VPAYSGESKE PNKADSSVVD IKQSDSSYRR 120
  121 RSFKKSLLTG FCLALMALKF AIQNMPPYDY TPYHPNEKLF TAGIWTIHFG LDNFMYASEN 180
  181 RIRDAVRDME LDVFGLLESD TQRLIMGFRD LTQVLAHDLG MYADYGPGPD KHTWGAALLS 240
  241 KFPIVNSTHH LLPSPQGELA PAIHATLDVY GELIDVVVSH NGQYESQLDR RLQSTELARI 300
  301 MRESPRPLVF LGYVVSNVGQ EPQTILTRDT GMLDIEPADY DRWCQYIFYR GVKRIGYARL 360
  361 HRSTITDTEL QTGKFLVTKD LGRNVRIDKE HVPESHRYPS LFEGTGVNGH YYDNNLVVHE 420
  421 PWYYD

Type	Start	End	Confidence
Non-Cytoplasmic	1	8	0.68
Transmembrane Helix	9	30	0.88
Cytoplasmic	31	41	0.60
Transmembrane Helix	42	63	0.88
Non-Cytoplasmic	64	75	0.68
Transmembrane Helix	76	96	0.80
Cytoplasmic	97	125	0.79
Transmembrane Helix	126	142	0.78
Non-Cytoplasmic	143	425	0.56