YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ugo1
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPYRPYVVV NNVEPTFSIT PEPTFETQPT ISKSEIFETL RSILVTKYLT TFFVQPLEVA  60
   61 KTVCQVEEYL PKRTKIERDG KQTKEPYDED IPDGTEQEGL SDDEHEIYAY FETPTTEKAV 120
  121 TEQLAEKLCV DASGYVTDPS NLIERSYTIH SKRFSIKSII SELWEKEGAR GLWKGHTISF 180
  181 LHNLLYSGLQ SWLSATLSGA LAIADPNIIS PIDSVRPLLS LFIKSITSAI SALILSPLDI 240
  241 ARTKIILFPI SSSSYLSSAS ETSGNSHKKF KPLTIRQCLK ALPFYCPSSL ILPTVCYVSL 300
  301 PPFVSSVLPL TFRNFLGSSP TLDAMVGLGT SAVQFLLKCP LEMVLRRAQA QYECNLPPQT 360
  361 IVPVGKYTGI VGTIWCLLSE EDPGKFGIEG LYRGWRVGIW GMSSTLALNY ISSNLREEVE 420
  421 F

Type	Start	End	Confidence
Cytoplasmic	1	179	0.82
Transmembrane Helix	180	204	0.65
Non-Cytoplasmic	205	219	0.75
Transmembrane Helix	220	240	0.76
Cytoplasmic	241	280	0.84
Transmembrane Helix	281	301	0.74
Non-Cytoplasmic	302	319	0.70
Transmembrane Helix	320	337	0.70
Cytoplasmic	338	421	0.68