YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPCC550.09
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRAHLFSEP DNSKLWAKST GSDAFDLILK VLLWTAPWYY CLTTLFFTWL IILYPRPTLA  60
   61 CSVAAWLFWF TSLDTLEPDD RKNTLKASEA VSTSAKTSEE TAKPSETRED GEWNTLKNTL 120
  121 EADAQNLMSG FQMLQRRWSQ PKTTTLKTEV KEQQASQSPS VEGENEPAGV KSNEATKPSV 180
  181 TEEKEKNAEQ NKRRERLSIS HIVTELAKKD EVSSESGSNE IVNAKLKNEQ LDSNFTLLDA 240
  241 YLEPLVHLHE YSRRSNTLFF FYLPIVMSIL IFCLPTQALF IVLSSVFLAW HSPPLQAVLF 300
  301 CIRRISFFNL LYEKFVIGKT KEPAKPVPQP SSNEPPAPSA ENKQPSVSSP EKKESPATHL 360
  361 LKVIGSSPYV VHSNHTNNTL TDKESSDPTE KCLYLIEHQR YWVGVGWLNR TLPTDPPNFT 420
  421 NAGSTDPVAE PTAQLLPPDG LAWIDDKWSI SPWTFTDTFW AQPAKTQFRT AFTRSREWRR 480
  481 RYRVAPPAEN EKPHTSRTNT ASSLSSTSED QVSTHGSISS AKVTAIPDSN GAEAL

Type	Start	End	Confidence
Cytoplasmic	1	26	0.53
Transmembrane Helix	27	52	0.66
Non-Cytoplasmic	53	53	0.22
Transmembrane Helix	54	70	0.59
Cytoplasmic	71	257	0.96
Transmembrane Helix	258	281	0.91
Non-Cytoplasmic	282	535	0.59