YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SCS3_SCHPO
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEKTASHYW NEETSILKLR RKDILLFEIY ATTLLLGSIY SIYVDKWSIT SYFGNSKNLI  60
   61 NLIFVKRGWF WTSLVYFYHA WDQKRNKIDF KFISRYIVAT LWWMFVTQWF IGPGLIDRTF 120
  121 ALSGGSCKNF DGDSSVFIPL TASTCKGLNG SWSGGHDLSG HVFLLTHSSL FMLSENFSFI 180
  181 LNNGIKATST KVLFGLLGLW WWMLFVTASF YHTTFEKCTG FFSGILEWSI VYVFSSRMPA 240
  241 VADLLGSSDY

Type	Start	End	Confidence
Cytoplasmic	1	23	0.98
Transmembrane Helix	24	44	0.92
Non-Cytoplasmic	45	62	0.86
Transmembrane Helix	63	81	0.90
Cytoplasmic	82	91	0.95
Transmembrane Helix	92	112	0.90
Non-Cytoplasmic	113	159	0.94
Transmembrane Helix	160	181	0.87
Cytoplasmic	182	191	0.79
Transmembrane Helix	192	212	0.91
Non-Cytoplasmic	213	223	0.66
Transmembrane Helix	224	241	0.49
Cytoplasmic	242	250	0.52