YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RCF2_SCHPO
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLSTPEEVK AFNRNTYSAL FKGALVGSSL GIAGWLIGNR YSAGFRRLPF SLKSWLVIGS  60
   61 GSGASIIFAD KAGLKFEAER YGKFDQIDYS TKGLPWNQRA LYYFNEHKWP IILGTWASTM 120
  121 GLSLYAASRN RYDTAPQKLI QARMYAQGVT VVVLLGSVYL STLANRLEPL EREVLVTDPS 180
  181 NPTKLVAFKQ RKERYPGELQ WEVLVSQDEE RLRKLNLPLR EPHGSTGPMS TPTPALNSSR 240
  241 SA

Type	Start	End	Confidence
Non-Cytoplasmic	1	18	0.47
Transmembrane Helix	19	39	0.90
Cytoplasmic	40	49	0.45
Transmembrane Helix	50	69	0.75
Non-Cytoplasmic	70	108	0.58
Transmembrane Helix	109	128	0.81
Cytoplasmic	129	143	0.62
Transmembrane Helix	144	163	0.84
Non-Cytoplasmic	164	242	0.66