YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPCC1020.05
Protein type:	Globular with Signal Peptide
Type Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMLPKRNIIH FLRKRAIFIV AAFIALLTVD YSLNTIEITD SKSGPFSLNT PIEDIRLVEC  60
   61 FSFSPFCRPV LEFWKWARTS RNLYRSRIPW KRAYLYVKRP ALYIPGETVL VEQVYVDRQL 120
  121 EKRNKHGIQI RYGTDGDICE FNTLLGEDVV ELREGWSAVL NDFIYLGQPV LLTQRPCETP 180
  181 PTPSIEALKR KELSSVTLTY DDEEKKTIKI LQLSDLHYSN SDRPCRDPYP YETAEDCMAD 240
  241 AKTTAFVNEL LQLEEPDFVL LTGDLINGDT SRDARSSLMK AVSPFVDYNV PFAVNFGNHD 300
  301 DLGDLSREEL AKILSQIPGS MGLIGNVSGV GNFVLHSPRK FAIYVLDTKG DTSNRRLCPG 360
  361 YDAITEDQLE WLSSKVADFK YEPIQMAVLH IPLKEFCETE DLVGAFREPC SYSICDPNTA 420
  421 KALKSLRIPL AIAGHDHVND FCGIHPDYNT YFCFAGGAGF GGYGGHGGYV RRARVFELDP 480
  481 VERAVRTWKR LEWPPEDRKL MLDVQTILV

Type	Start	End	Confidence
Signal Peptide	1	32	0.50
N-region	1	23
H-region	24	29
C-region	30	32
Cleavage Site	32	33
Non-Cytoplasmic	33	509	0.98