YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPAC227.06
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAHEIEIDSE ADLGRTTFEA EDLYKQRTPI TKPPAPRLQS RRASMQETPW TIKDSFNVET  60
   61 KDVVQRCIHT LIPTVNFFDV VDDRPDLYGP FWITTTVIQA LFFSNSITEY ARYATGHGTS 120
  121 GYSIKKLISA ASIIYGYTTI IAVLLWGILV WNKCNPKLLD CLCLYGYANI VWLPVSLATP 180
  181 PFGLLSTLAS HIVKYVLTGI GLLISIVFLT RNLYPICQQA GSNLCKLLLF GIIVFHCLLA 240
  241 LSLQLIFFS

Type	Start	End	Confidence
Cytoplasmic	1	90	0.74
Transmembrane Helix	91	108	0.59
Non-Cytoplasmic	109	127	0.75
Transmembrane Helix	128	150	0.89
Cytoplasmic	151	160	0.70
Transmembrane Helix	161	184	0.76
Non-Cytoplasmic	185	190	0.78
Transmembrane Helix	191	214	0.86
Cytoplasmic	215	223	0.88
Transmembrane Helix	224	247	0.89
Non-Cytoplasmic	248	249	0.77