YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPCC126.09
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEMSIRLFL HLSKEFYDCC GLFLLTFFLL TTCQLRILSL SINAFCVFGA SGIYLDKLVN  60
   61 KWFGYEVLDL ANSDNALVTG LATSSGILLY SSWASVMQES FHFLEKISMF DTFLVRVFQF 120
  121 CAFFFGGIVF YIFNHFLHKW LHESSQTGFL HDHFSVSDPS PSTAQNHRSP PASCKRLSSC 180
  181 ESSGSPSSRV VGSLQGSYCP SGTHLHEGSL LLEDSSARHS SDSVHEYLVK KPSNCDCECH 240
  241 AHFSSFPTHS GTPDDIEHIH SVYTMGIQTA LLICLHKVPE GFITFLASTV DTGFMVLVAM 300
  301 SIHNIVEGFT IAYPLYLAWK SRPKAFLTAA TLSSCSLPLG SLIAFLVMEA GGIGSSDFLN 360
  361 FLYGIIFAGT AGMMLILSLR VILPEALRHD HSENKRHSFI CFTIGILFTL FLEIFDSH

Type	Start	End	Confidence
Cytoplasmic	1	19	0.73
Transmembrane Helix	20	54	0.70
Non-Cytoplasmic	55	75	0.54
Transmembrane Helix	76	96	0.87
Cytoplasmic	97	112	0.52
Transmembrane Helix	113	135	0.89
Non-Cytoplasmic	136	292	0.57
Transmembrane Helix	293	317	0.73
Cytoplasmic	318	325	0.88
Transmembrane Helix	326	348	0.91
Non-Cytoplasmic	349	360	0.83
Transmembrane Helix	361	383	0.91
Cytoplasmic	384	396	0.92
Transmembrane Helix	397	415	0.94
Non-Cytoplasmic	416	418	0.83