YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	pvg5
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLPLRIFAG NGIGGWCLRL FLFGSLILLL RPLIFYSNTT MKKLKTEYPI YHRHLSALKR  60
   61 NFYYTMDAQL GGIRNVVLIN RPCFAASDNF LTLMGQNWYL KERNINVLSD ICFPLSNNAH 120
  121 DSLPTFNNGS DLFNPLYFAV LNAATPARFT FHLFNHVMDS VVPFDEAKKF KVRSFPINYA 180
  181 EYADDECQLA LKKIRPIPDK YLVSTRVLSD SRYLELSGAV VAFAPDASSS LLFELADIKQ 240
  241 HKKTSADILI FLSKDHNLPV SFYDNYKLKY TLHFWQPPSF PDSSTIDDQA KLLFDYVVSQ 300
  301 VVKYPYFVTD IYQIHLLGVY LNLKHVYLLE NDDVEDAYYE RQWMQAFQRK NVVAVAEELQ 360
  361 TALRIIEQWK QL

Type	Start	End	Confidence
Cytoplasmic	1	11	0.59
Transmembrane Helix	12	35	0.80
Non-Cytoplasmic	36	372	0.76