YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPCC553.06
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGFFLIAGF LLFARALCAS WNVEEGTLQL SSQDLESENA YDLKFSQIQS STVYELTGDE  60
   61 TLNLKFTCIL NGTGAIPHQA HLLLSDTEHP TLAVIYPASV SQGGVASLEL RLFDIPTSLL 120
  121 RSDSTLTAKL LVASFGETIP FSLPLGQLSI NVPPSLYHKA EFSPLDELSP KEVILHTFSP 180
  181 PPKRANYFLS ICFSVSVVVS LIGLLGVWQK LLPKSNVYSV SSSSFARTFG FASLAVAEIL 240
  241 LFIYWTSLSI FQFGAYAAGV AIMCGIAAKS L

Type	Start	End	Confidence
Signal Peptide	1	18	0.99
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	186	0.99
Transmembrane Helix	187	208	0.96
Cytoplasmic	209	224	0.85
Transmembrane Helix	225	244	0.91
Non-Cytoplasmic	245	249	0.66
Transmembrane Helix	250	268	0.87
Cytoplasmic	269	271	0.72