YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPAC750.06c
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNPESLKKQ VEPPGYNELF MVEDVCNVDL EQGLDLCKPE KVNKQSQRSR QSRQSLFTNT  60
   61 IKPQKDKMNI KTNKIKEFLN DPFTEFSKFH NSYYPDGRIS TRSNFRWPLL IIWSIIIVFA 120
  121 VDKKFEVQKF LSIWINENRF YSEIWVPIAI YVCLLVLMLL SLIFFAEFAV LALRVTGVII 180
  181 AVLGAVLGMI IAVLGMIIAA LGMIIAALGA TITGLLYFGH WALYKLVILS LGFKIVTPGD 240
  241 VCVSNTLPTH NGETALHSET TVGSDIEQIE LQNMPTPVKK

Type	Start	End	Confidence
Cytoplasmic	1	104	0.96
Transmembrane Helix	105	123	0.89
Non-Cytoplasmic	124	143	0.89
Transmembrane Helix	144	165	0.93
Cytoplasmic	166	174	0.67
Transmembrane Helix	175	198	0.86
Non-Cytoplasmic	199	202	0.48
Transmembrane Helix	203	224	0.87
Cytoplasmic	225	280	0.93