YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPCC790.03
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILGRSKEFI LKLPIWTQII TYIAILVYAL SFFGISTGVL SLSWIGLLQK RQLYEIITYV  60
   61 TLHLSMLHIV FNFVSLLPAM SQFEKKQGTL ACILVTVIPY TLFPGIMHLI VYHFFLRKDY 120
  121 VSIAGLSGWA FAFISASCVH SPQRLISFFN LFSIPAYCFP IIYLIMTTIL VPKASFIGHA 180
  181 SGAVMGYCTP FMLGSIPLKS WAQNVDPIFQ SWVKNYHSFD QLSHAQLPIA EPLSTFSSFP 240
  241 GKGTRLGG

Type	Start	End	Confidence
Cytoplasmic	1	18	0.88
Transmembrane Helix	19	42	0.88
Non-Cytoplasmic	43	55	0.82
Transmembrane Helix	56	79	0.85
Cytoplasmic	80	89	0.81
Transmembrane Helix	90	112	0.92
Non-Cytoplasmic	113	119	0.84
Transmembrane Helix	120	139	0.94
Cytoplasmic	140	147	0.75
Transmembrane Helix	148	170	0.89
Non-Cytoplasmic	171	175	0.78
Transmembrane Helix	176	196	0.85
Cytoplasmic	197	248	0.89