YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPBC1539.04
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPKQRVVKP LKERVLPVVK NTQFVWFSGQ VIVLISSVLY ALQAIPFRSA PPFLFKSAAF  60
   61 GAIVAYAIVL YKTYSPNLTS RASWNKHFFA RLMLDDNVQY FILALSMLID RPILFSLAPY 120
  121 AIYATFHIST YLRSVLLPAI YPNISDAKTA SYASRVSNLL NQYTRSQFQP AMQLVASLET 180
  181 FLLFRLFFGV FLRKNSISRL VGYIFFLRMR YTNSHFTRAS IKAVSLRMDR LVADNRVPPV 240
  241 IKNAWHTFKT YVSKFGASPV GTAQSRPTAS SSTTAPSST

Type	Start	End	Confidence
Cytoplasmic	1	20	0.93
Transmembrane Helix	21	44	0.88
Non-Cytoplasmic	45	52	0.80
Transmembrane Helix	53	74	0.90
Cytoplasmic	75	99	0.85
Transmembrane Helix	100	128	0.60
Non-Cytoplasmic	129	169	0.83
Transmembrane Helix	170	189	0.79
Cytoplasmic	190	279	0.85