YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	BRR6_SCHPO
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEMYVEDVPM PDIGPDSVLN TPIRPKYEIL KSKKKTQNEN DPEPMDISMS PDEKNLKKST  60
   61 VRRKLRKSKP NSSSNQVSSR TRALTKRSNS SNAIIKANNQ DSVYVSDWTN VHRDIPIVVS 120
  121 GYLQLMFNAC VASIFLYFLF KIVFGIQNDV RNRVEYHKIL QEEQAADCQR EYLSINCDSP 180
  181 GPAIFEVCQK LKQCKMESSN NVGSTKLAAL VFAEIIDAFI SHISYKTMVF SLILVFGSLL 240
  241 TSNYAFGLYR ARHSQNIHDY AANAIPAMIP SSRFLPSNLS DISNRNLIEA ASQEEEI

Type	Start	End	Confidence
Cytoplasmic	1	120	0.69
Transmembrane Helix	121	140	0.79
Non-Cytoplasmic	141	227	0.65
Transmembrane Helix	228	248	0.87
Cytoplasmic	249	297	0.77