YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPCC594.02c
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPAVFTSDY WKKYFSNKKK PTVKNTSDID LLHINRGRQP FDEGLSINED SFFYRHNIHV  60
   61 PRIVYLIIVA CGSFIITGGI EFAIAYGMYK KTETSVRLWR LPDTLSGDAA VTNFVQAIVT 120
  121 YWVESILVQG DLRSGLVKPI YFGWWPENFL LREVLRAKPR YHFKFIVFRW MEWLVFVGLR 180
  181 GLVWSVPLWF LFWPATVGIL CAPGRHEGND YYFNNYPAPQ VFKLIFGGGE GFVLTPWIAF 240
  241 LHMYMYGHYL HVAKNQKSLP KTSDLEQQRG TSSSQPSEND ANITALPKPE PKMYENSDLT 300
  301 PARTPVTPAP LEKPVNLAPE VVEPTNAAAS PLQLNAPKLT DVDDSALAYD PTKVQDGEDR 360
  361 FVHNDVPLEN AENPSRFVHS DAPIDMTHTT TVISEAQNLP STLLPQDGNA VHHDTDAPSL 420
  421 SNVRKSVDSP RVPPSFSDDA VSSFSLVTAP SINNVGGSTA PSVNNQEREY DYDDTSSRSS 480
  481 TLTERPVVH

Type	Start	End	Confidence
Cytoplasmic	1	62	0.64
Transmembrane Helix	63	85	0.91
Non-Cytoplasmic	86	108	0.55
Transmembrane Helix	109	123	0.49
Cytoplasmic	124	165	0.83
Transmembrane Helix	166	190	0.76
Non-Cytoplasmic	191	223	0.84
Transmembrane Helix	224	246	0.79
Cytoplasmic	247	489	0.93