YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPBC19C7.10
Protein type:	Transmembrane
Type Confidence:	0.62
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTENEKSRSL PAERNPLYKD DTLDHTPLIP KCRAQVIEFP DGPATFVRLK CTNPESKVPH  60
   61 FLMRMAKDSS ISATSMFRSA FPKATQEEED LEMRWIRDNL NPIEDKRVAG LWVPPADALA 120
  121 LAKDYSMTPF INALLEASST PSTYATPSRP TAQKSETSEG EPESSTSATT TSVARRTRQR 180
  181 LAEHLENSKK TILQHDNKEE DKEIHSEENE TKDEIKSEKK EPEIKKQEGG SSTEKVGQPS 240
  241 SSDDKAKGST SKDQPSEEEE KTSDIQDRKI KTPIKPSLLG KIRSSVNKGM TDVASQVNRG 300
  301 MTDVASQVNK GVNGVASQVN KGMNGVANQV NKGVTGVASQ VRKPVGKLEK KFENLEKSIG 360
  361 DTLKSSIRSS PKSKKRSRED FEENEDYNAM VPVKRSRITK LESEVYYEKR KVRALGGIAI 420
  421 GLGVGAILPF LF

Type	Start	End	Confidence
Cytoplasmic	1	411	0.50
Transmembrane Helix	412	431	0.59
Non-Cytoplasmic	432	432	0.88