YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPBC530.09c
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.91
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLLTCLINV LAGLTLFSQF QRAFGLTITR RGFKVQESDE EPFCALHHPN TGEYFDLSGL  60
   61 IRDNTSEKGD YSVNGYDFGT NFSINLCHPV VSNLTNYTVE GDVSSEDSIG GFFTVEDDDL 120
  121 YSIGQAAYKP YFRGKKLIMQ LDNGSLCPKS NHIRMSTLIS FTCNRDPYTA PSVITYVGNL 180
  181 NDCAFFFEWK TIHACPTVKK DSTLNPVSVF LLFCAIAFLA YFVGGFVYQR VVLNARGLRQ 240
  241 IPNYEMWRSL FGFISDIVII LYSSILSILP SSITRMRGNR RNIDYVEDAL IDDIDT

Type	Start	End	Confidence
Signal Peptide	1	25	0.84
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	208	0.90
Transmembrane Helix	209	229	0.93
Cytoplasmic	230	248	0.74
Transmembrane Helix	249	269	0.91
Non-Cytoplasmic	270	296	0.82