YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPCC306.06c
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.93
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSWSILFIV CFSLVSAFKD TSPIFLFSTN SKLPKSSDDS SISTCPMMFF DAAIEALSTC  60
   61 NTATLIIHQP GLEVNDFQLG AFKHLKRVSL QSPYSLLLPY SKESLDSQEL VHSAKQNCDV 120
  121 EVVYLGGSFN AFPPLQNDRI TVVYMNELSN ESYHRSAQLM ELDEMFYNLQ STLEQDAQWN 180
  181 VIIASSPLNN SDFEGFKVDA NEEEANAEFV IQTLGGLNSG KSALQHGQLA SLPDQNEGSQ 240
  241 TTLAMHQTRK HPVTDNGATG LFTEYQFFTP GLYMGYLALA VLVPTLFISC RLLSSIQISY 300
  301 HAFDSPRRKQ L

Type	Start	End	Confidence
Signal Peptide	1	17	0.99
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	271	0.99
Transmembrane Helix	272	293	0.88
Cytoplasmic	294	311	0.89