YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPAC8F11.08c
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFATILYSI WVVLSSFVIL SAYQLEVRKF LVKLLSKIVI GASESNVASF FAFVSEKSLE  60
   61 AASVKFVATI IAERMGAQFS SFYDKIFFVD MLGLGSLFAL AAVNVLAARK LESELPASLE 120
  121 PSIGNRDQQK NSSLAKCFSR LFINDLHGTT VKRYPYISYL PNWLLAKNNA ERLVYKSHLL 180
  181 LNAYSPPKSA SASSVIVWVC GAKKSESIII PYLSSLGFFV VVPNYAQPPK FPLSDAVEFV 240
  241 SLCVDWIVEN AIYYDADPER IFFLGEDTGA SVALESLKHI RPNSVKGIFA LCPRSIQNLV 300
  301 WTNQSTIPMM TLHAGDVNPV SDSNDRESSE KASLIKNFVV PGAVPYYYEF TSPRTISTAT 360
  361 FIARWFFLVE DNKKTI

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.65
Transmembrane Helix	7	25	0.89
Cytoplasmic	26	85	0.43
Transmembrane Helix	86	108	0.82
Non-Cytoplasmic	109	376	0.60