YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DSC2_SCHPO
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSANIVPSN MGITKFLLLT ISTSSVVAGV FALKPFFHIN FGLHLLSHYQ YWRILLWQFI  60
   61 YWNSTEVFQA LFIIYQARDV ERLLGSHRFA SFCVYMFILG MFVTPIFSFL YSLLFKNLDY 120
  121 IQPGPTFLIF AILYQYYYIV PSTVFVRLFN IKFTDKFQMV IPMIGLAFSH FPSTFINAFL 180
  181 GWTMGMFYHL SLLPGTSWRL PIRFVKPALS PTHVFIRPPY SDMQNASTFN PETLFALPTG 240
  241 LDAERTENEN QVENPVSNAD ANDSPTRQNA RATAIASSSN TAASFRNRQQ ISHPPLGRTS 300
  301 SSSVLPTGPA SQLYDMLSGR SERPELGNIR EEDINTVQTI MQTSRAQAIQ ALSQTNDVQR 360
  361 AVELLLEQTA DY

Type	Start	End	Confidence
Cytoplasmic	1	15	0.87
Transmembrane Helix	16	37	0.90
Non-Cytoplasmic	38	53	0.93
Transmembrane Helix	54	75	0.89
Cytoplasmic	76	91	0.82
Transmembrane Helix	92	113	0.91
Non-Cytoplasmic	114	126	0.81
Transmembrane Helix	127	149	0.81
Cytoplasmic	150	159	0.78
Transmembrane Helix	160	190	0.75
Non-Cytoplasmic	191	372	0.64