YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|5441464
Protein type: Transmembrane
Type Confidence: 0.88
Topology Confidence: 0.78
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SIHIIQNLLN ELDNYVDRSD CLFHSVWRTD KEKSKFSGNY YPFSPSKMNV ITIDLSLRSS  60
   61 STADEKLISQ LGEEAHESLL KVHIEKANKH LFSLFSRVED TSSKILITGD LNAGKSTLCN 120
  121 ALVHKDILPE DQQPCTEVFC EVHDAELNDG KDCVHAIPHG LTYSHTDSST YKVFPIEDLK 180
  181 RLVYETENWS MLIVYVNDGR PAHESLLHNG ITDIALIDAP GLNTDSMKTT SVFACQEEID 240
  241 VVVFVVNAEN HFTLSATDFL RNASTEKSHI FIIVNKFDNI RDKERCKRLI LEQIHTLSPG 300
  301 TFADAKDLVH FVSCRVARDP NNREDALYSS FFQMENSLRS FILENRSKSK LAPVRRYLSG 360
  361 LVGDILNICE YNIKLIDFDI NHLQQRLTDL SPKFRKVKHE QQFTYQKNES LVEATVQSIS 420
  421 QHTHSELEDA IDSLGSFASV KYSGFFFAYQ YAISVRDAMQ QYLEEKLLES EDYARKRTEE 480
  481 AVLCIQKDVK DNFDSAVLPV FHANQMFIKK HRLQLQKHFR FELGLLDFID LDLTERLGTW 540
  541 SASLSTILLV LGKTTPSFTT LGAFTGNLGY PIFKYFQNNS LQHLLVPVLG LASICVFGYV 600
  601 IYDIPRALPL KVAEKIKKSL RETDFCHNAS IWIGTESRKV LNIPLNDLRR MFHQQWDKQR 660
  661 ETISVAENDL RICQKARKFF GEIESRTREA KKKIMMVQLE GCDINY

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle