YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPCC594.07c
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGSKCCSSS NTIKVSIYLF LHTLTYGLLN YHLNPRLLAS TGVVESDIPY WMSYLSIIMH  60
   61 VGQSLLLQKF NLGYGWLLLT KYPVYVLLST YYLTPLSQIA WAFIIDAISL LVARCFSRAN 120
  121 PIKCSNQVNT QYSVSFLFTI MASVLISVLN YISQKIFLNG LILGNSHNVV TSLVAPPLPL 180
  181 QYLAHVPIGY VIQRVVFSER PIPQSLFLMI FLTLWNCFIP YSILFSMNWS AMFQVVGAYL 240
  241 SQIWIITFIC WALSL

Type	Start	End	Confidence
Cytoplasmic	1	47	0.53
Transmembrane Helix	48	67	0.65
Non-Cytoplasmic	68	98	0.45
Transmembrane Helix	99	117	0.87
Cytoplasmic	118	131	0.83
Transmembrane Helix	132	153	0.90
Non-Cytoplasmic	154	172	0.77
Transmembrane Helix	173	192	0.73
Cytoplasmic	193	204	0.70
Transmembrane Helix	205	225	0.93
Non-Cytoplasmic	226	230	0.81
Transmembrane Helix	231	253	0.89
Cytoplasmic	254	255	0.80