YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YIP1_SCHPO
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAYYNNPANL QYYDYSYTAD NSFNTQSRAA GFYDEPLHEP LSQGWLAAFS TSGYPGEPSL  60
   61 LEELEINFGH IKQKTTHVLN PFKHVDVHIM DDTDMAGPIL FCLLFSTFLS LHGRSHFGYI 120
  121 YGIALLGSLS LHFVLRLMSA KNLFFTRTVS VLGYSLLPLV VIAFFKNIFT FNGIAGYALA 180
  181 ALACIWCTYA ASAMFVGILQ VNNMRFLVAY PIALFYGVFA VITVFSK

Type	Start	End	Confidence
Cytoplasmic	1	92	0.83
Transmembrane Helix	93	111	0.70
Non-Cytoplasmic	112	116	0.70
Transmembrane Helix	117	135	0.94
Cytoplasmic	136	143	0.70
Transmembrane Helix	144	165	0.89
Non-Cytoplasmic	166	173	0.68
Transmembrane Helix	174	198	0.88
Cytoplasmic	199	205	0.78
Transmembrane Helix	206	225	0.95
Non-Cytoplasmic	226	227	0.72