YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SPAPB2B4.04c
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.68
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTYNDDDDS SRPPSVHSER NQKPSSSQFL GVPSSNYNQR ENSSRSGSST ISREPSSSGT  60
   61 MYPMASRDSM KESYDKNKGT PPDYTSYVSH SDAEPEQASS KSSTSIEDLL HTEYDDAPFA 120
  121 FSIPLLQRLQ DPKNTSLLHA IHGLKGLCKG LKVDPSTGIS THEPHYADKL QMSDILNDDS 180
  181 NPKLVVHLDR IRSQDNNPEA KVSHDSDRVK YYGKNVLPEH DSKGLIRLML EAFKDKVLIL 240
  241 LSIAAVVSLA LGLYQTFGQP PTLDPITGKP EPRVEWVEGV AIMAAIVIVV TVGGVNDWQK 300
  301 ELQFKKLNAK VSNFDVQVLR DGAVHSTSVF DLVVGDVLFV EAGDVVPVDG VLIESNNLVL 360
  361 DESAMTGETD NIKKVDANTA IERTSPDVEY RKNADPYLIS GTTILEGNGK LLVTAVGVNS 420
  421 FNGRTTMAMR TEGQATPLQL RLSRVADAIA KLGGAASALL FIVLLIEFLV RLKSNDSSSK 480
  481 NKGQEFLQIL IVSVTLLVVA VPEGLPLAVT LALAFATNRM QKDNNLVRHL QACETMGTAT 540
  541 NICSDKTGTL TQNRMTVVAG GFGTDVLFFD HNDETPTNVD QGSDSSKFED AGASAFAFKR 600
  601 LSPELRDLTL YSIAVNSTCR QLFEDNSDTP RFIGSKTETA LLDMSVKELG LTNVDSMRSS 660
  661 VDIKQFFSFS SDRKASGAIF EYKDKYYFVV KGMPERVLQQ STSVITNGSL DEVEDMHSHA 720
  721 DYFKEMITGY AKRSLRTLGL CYRVFDSWPP KDIPTNDEDS SNPLKWEDAF TDMTFLGFFG 780
  781 IMDPIRPDVP LAVKVCQGAG VTVRMVTGDN IVTAKAIASQ CGIYTEDGIS MEGPEFRSLS 840
  841 DEKRLEILPK LDVLARSSPL DKQLLIEGLQ KLGNVVAVTG DGTNDAPALK KANVGFSMGK 900
  901 SGTEVAKEAS DIILMDDNFS SIVKAIAWGR TVNDAVKKFL QFQITVNITA VFLTIISAVA 960
  961 STDQSSVLTA VQLLWVNLIM DTLAALALAT DPPTPEVLKR KPEKPGASLF TFDMWKMIIC1020
 1021 QSMYQLAVTL VLHFAGNSIF HYPSNTADMN TIVFNTFVWL QLFNEINNRR LDNKLNIFER1080
 1081 INHNFLFIAI FVIVAGIQVI IVFFGGAAFS VKRIDGKGWA ISIVFGVISI PLGALIRCVP1140
 1141 NNFLRKVLPV KTIDTVFSWI LNPRFRSKRR STDHDVESLS LIPYEPTSPN EVIDSIRHSL1200
 1201 GFVQRIRGGR IRHLLNNSKF DKQMEALPER LRPRVKQRFM KIRSPSVSSA TSVALMIPIS1260
 1261 TLVSEASGRL GGHDIWISHN RQALDKKSSN VH

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle