YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPAC31G5.07
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.53
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLFLHSVVQG TGTLCTLAAW ILLALVMTGC QSSTTSKFQL FSLATNVAQI NVGYFNMCVL  60
   61 SANATLICKP QFTGCPGLTS ISLTDVRSKF LINEVHPWMI VFSFCVCGVS FLMGVVSSLP 120
  121 LIGRLEFLRN IRISLSFFSF FSILVTALFA HVAVSSFVMA VGNGTQNRVT ASLGKKAMIF 180
  181 LWCSMGLVTL TGITDSIILL VTSRTKKIRK TILEKSKVLT PSSSFSSKSS TTKY

Type	Start	End	Confidence
Signal Peptide	1	32	0.53
N-region	1	23
H-region	24	29
C-region	30	32
Cleavage Site	32	33
Non-Cytoplasmic	33	97	0.83
Transmembrane Helix	98	122	0.89
Cytoplasmic	123	134	0.85
Transmembrane Helix	135	155	0.91
Non-Cytoplasmic	156	177	0.87
Transmembrane Helix	178	201	0.93
Cytoplasmic	202	234	0.97