YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ght7
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	26	0.78
Transmembrane Helix	27	47	0.77
Cytoplasmic	48	55	0.84
Transmembrane Helix	56	75	0.93
Non-Cytoplasmic	76	82	0.71
Transmembrane Helix	83	102	0.92
Cytoplasmic	103	114	0.80
Transmembrane Helix	115	137	0.87
Non-Cytoplasmic	138	147	0.84
Transmembrane Helix	148	169	0.91
Cytoplasmic	170	233	0.96
Transmembrane Helix	234	255	0.86
Non-Cytoplasmic	256	270	0.91
Transmembrane Helix	271	292	0.90
Cytoplasmic	293	300	0.74
Transmembrane Helix	301	319	0.90
Non-Cytoplasmic	320	333	0.76
Transmembrane Helix	334	355	0.89
Cytoplasmic	356	372	0.78
Transmembrane Helix	373	395	0.85
Non-Cytoplasmic	396	402	0.78
Transmembrane Helix	403	423	0.93
Cytoplasmic	424	518	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRDFQSRFAD RYNQITNSYS YSSSRQGLIT GMVNVGSFFG CLLSSPVADK IGKRLSIIVW  60
   61 TTVYLIGIII QVTTVPSWVQ ILVAKIWTGL SIGALSVITP GYQSEVAPAI MRGAIVTTYQ 120
  121 LFITLGIFIA ACINMGTHKY SHGTTAQWRI SIGINLLWGI ITLVGIIFLP ESPRYLIAIG 180
  181 KDDEALKIMC YNNDLPLEHE IIQTEYHTIK SDCDAELAGG PARWPEIFNA NIRYRTFLGM 240
  241 AVMMFQQLTG ANYYFYYGTQ VFRGTGMDSP YLAALIPDAV NCGCTFGAIF VLEFFGRRSP 300
  301 LIVGGIWQYI CFFIYAAVGD RALYHKNGTS NHRAGAVMIV FSCLFIFSFS QTWAPAAYVI 360
  361 VGESYPVRYR SKCAAVATSA NWFWNFLISF FTPFITNSIG FKYGYIFASC NLTGAAIIFL 420
  421 FVHETKGRTL EEINTMYASN LKPWMPHPEG YREFGREQNN ATLKSHIGLN GETTELIENT 480
  481 DNQGDSGSFQ TSTPDDSRPE QNQASATYIR PDKREPRL