YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPBPB8B6.02c
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.85
Transmembrane Helix	12	34	0.89
Cytoplasmic	35	53	0.84
Transmembrane Helix	54	72	0.87
Non-Cytoplasmic	73	82	0.70
Transmembrane Helix	83	105	0.89
Cytoplasmic	106	130	0.90
Transmembrane Helix	131	152	0.90
Non-Cytoplasmic	153	161	0.78
Transmembrane Helix	162	182	0.90
Cytoplasmic	183	194	0.71
Transmembrane Helix	195	216	0.89
Non-Cytoplasmic	217	249	0.93
Transmembrane Helix	250	270	0.87
Cytoplasmic	271	289	0.76
Transmembrane Helix	290	313	0.86
Non-Cytoplasmic	314	341	0.77
Transmembrane Helix	342	370	0.67
Cytoplasmic	371	394	0.84
Transmembrane Helix	395	414	0.92
Non-Cytoplasmic	415	422	0.65
Transmembrane Helix	423	445	0.91
Cytoplasmic	446	452	0.80
Transmembrane Helix	453	472	0.94
Non-Cytoplasmic	473	489	0.81
Transmembrane Helix	490	513	0.84
Cytoplasmic	514	555	0.95
Transmembrane Helix	556	578	0.90
Non-Cytoplasmic	579	588	0.85
Transmembrane Helix	589	610	0.94
Cytoplasmic	611	673	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPILNQGYG YGFALGLGAA FALLMAIITK VLTACMGQTQ NSERFSTASR SVKSGLISSS  60
   61 TVSAWTWPAT LLSSGAWSYT YGIMGGFMYG VGGTIQITLF LFLAIQIKKK APAAHTVSEC 120
  121 FFIRFGKLGH CVYLFYCIST NVLVSSLLLL GGSQGFSSTT GMNTVAACFL LPLGVMVYTT 180
  181 LGGLKATFIS DWIHTVMIYI ILIVTCYTVY CSSSLIGSPA KMYDMLKEVQ EVYPATGGQS 240
  241 YLSFKNSEMM YLTWSVMIGG LSSVFGDPGY SQRAIASDAK SVFQGYLMGG LCWWIIPMAL 300
  301 GSSAGLACRA LLLNPASVTY PNVLSSVEIS SGLPVIYGMA SIFGKSGAAA GLVMLFMSIT 360
  361 SATSAELIAF SSVTTYDIFR AYINPAANGK QLVRTAHLSV IGFSLFIGAL SVGFNYAGVT 420
  421 AGWLLTFLGI ILTPEVSAVT LCLFWNKMTR FSLVVGAPFG TITGVVCWLA STYSFCDGIV 480
  481 NKDTVMTSKA CFVGNIVSMA SSPLYIVLLS YIWPDKETFD LNQFRNITVG DDIDTTELNA 540
  541 IVSQLKDERI LKLQTYWSIG INLFILIGCY VIIPTALLGS NHDLSKSSFS GLIIVCLIWI 600
  601 LVAAIYIILF PLWQGRKSLA NVISHIIRLK APENILLDGL TPKQSSEDVG DATSFHMDKL 660
  661 DKEKEKSSEL KTA