YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SVP26_SCHPO
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIVLNALSYL GIVLGFIGMT VSIASALYYI SEFVEEHSRL AKAFLCRLVY FIMAVMVFLV  60
   61 IFDGFPFWLS AFSIFSHYIY KINFDTFPFF SFKRMRFLLA CFLIVANHIL WVRFFQVHEF 120
  121 PIKPRGLTYD FVGQRLLTSR ASFSQVASFM GVCVWSVPIG IFVSFTAADN TLPTITTPSS 180
  181 SSPDAYSSGS SRRTSNVLRQ AYKKLGIFVE RSLTSLGLSD RSSERYV

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.92
Transmembrane Helix	7	30	0.91
Cytoplasmic	31	47	0.80
Transmembrane Helix	48	69	0.88
Non-Cytoplasmic	70	94	0.84
Transmembrane Helix	95	115	0.92
Cytoplasmic	116	145	0.83
Transmembrane Helix	146	168	0.82
Non-Cytoplasmic	169	227	0.86