YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ECM33_SCHPO
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.95
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLFKSFALTL LFAAARVQAA SNCSSGPYNI SAQGTLDELN SCTVLNGDLY ISDAGNSGIT  60
   61 TLTVNGIESV QGDVVVSDGQ YLTSLSFPSL KNVSGAFNVN NMIRMNNLAT PELTSVGSLN 120
  121 LAVLPNLQEL QFNAGLSDSD SVVIDDTQLQ AIDGISLDSV TTFQVTNNRY IQEITMEGLE 180
  181 SAQNIQISAN SKGVSVNFSK LSNVTTATFD GISNVFIGNL KSAAGNLYFS NTTLDNISVP 240
  241 YLTEIGQSFA VLYSPELTSL NFPNLTTVGG GFVINDTGLT SIDGFPVISE IGGGLVLLGN 300
  301 FSSIDMPDLS DVKGALTVET KATNFTCPWS NDDSVIKGDD FTCQGSVATI SATSSYDLSS 360
  361 TVSATSGSAT SATGSATTTS YSSDSSASSS SSSSHESSAA SNGFTAGALV LGSLLVAALA 420
  421 M

Type	Start	End	Confidence
Signal Peptide	1	19	0.99
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	398	0.99
Transmembrane Helix	399	419	0.91
Cytoplasmic	420	421	0.74