YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPBC16A3.12c
Protein type:	Transmembrane
Type Confidence:	0.84
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGFNKNQIY WGDYVGVIAA FVGVYTELVA RIFIYMIPER VREWFRVRII VLYHYYISSK  60
   61 TTDGMTDAVQ KCRNIYEICE AFGYRVEEHL VRTQDNFILC LHRITHPKQS QHKREVVYCH 120
  121 HGLMTNSELW VAVNESERSL PFVLIESGYD VWLGNNRGNK YSRKHITYKP KDEEFWNFSL 180
  181 DDMAMFDIPD TVDYILRETG REKLNYIGFS QGTAQAMAAL SINPDLNDKV NIFIGLAPAY 240
  241 APKGFSNYFV DYIVKVNPKI MYHLFGRRCL LPSVTFWQNI CYPPIFVKIV DVSLKILFNW 300
  301 DLSNISLNQK LCGYAHLYSF SSVKSVVHWL QIIKNCTFQL YDDDMALLAG YGSRHYQVPL 360
  361 FPTNNIKCPM LILWGGKDTL INMEVMRTAL PPHAKEVSIA HYEHLDFLWG QDVKEEVFPV 420
  421 VIDALKHHSL GKAKHFVKQN GFH

Type	Start	End	Confidence
Cytoplasmic	1	9	0.47
Transmembrane Helix	10	35	0.69
Non-Cytoplasmic	36	443	0.70