YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPBC16E9.18
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKFHRNVKP QFGAFARYSS LGKHNSRKRV GIIRLAYGLT GIGLVGLAGF AWAQDRHEKT  60
   61 YQKKGVQVEG PWQFYVLTTL PLRTLSRWWG YVNRIEIPLW MRVPAFGLYS KIFGCNLTEA 120
  121 DPDDVRQYKN LAEFFTRKLK PGARVIDPDA PIVIPADGKI LNYGVIEGGQ LEQVKGITYS 180
  181 LDALLGDEKL ARLKRSHAIP SPDHIPHIRQ EEFAKLNGIH YSLQDLMGHD HGERPSHVKD 240
  241 ASAQHIDLLS STKVAAKSQF TLFGSRETNC LYYAVIYLAP GDYHRFHSPT DWVVERRRHF 300
  301 SGELFSVSPF MARRLGNLFI LNERVALMGR YKYGFMSMIP VGATNVGSIR IKFDKDLCTN 360
  361 QFGKLGPVGT FDEAVYTSSS SILHGHPLLR GDEVGNFELG STVVLVFEAP ADFEFLVKQG 420
  421 QKVRVGLPLG RVVPSSH

Type	Start	End	Confidence
Cytoplasmic	1	30	0.83
Transmembrane Helix	31	53	0.78
Non-Cytoplasmic	54	437	0.95