YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	zhf1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFDLARQTRI ILLLGIDVTF FFIEIITGYA IDSLALIADS FHMLNDIVSL LVALWATRLA  60
   61 HSTSHEPKYT YGWQRAEILG ALSNGVFLIA LCMFIFMEAI ERFIEPPSVS NPTLMFFVGS 120
  121 LGLLSNFVGI FLFHDHGHDH PHTHTAQNYD FPEEDDIESV LPSTIVHRCN TSQQEVSHTH 180
  181 TQVADSATES SPLLSYTGNH NGAGTSKPVN NHGSIEQDAP KQTKKRNLNM HGVFLHVLGD 240
  241 ALGNIGVISA ALFIKYTDYS WRFLFDPCIS ILLTFIILFS AIPLCKSAAL ILLQVAPQSI 300
  301 KLDDVSNLIN HLDGVESVHE LHIWQLSDVK LIATVHVCVT LPDDKGESYT KLTTDIRNVL 360
  361 QSFGIYDVTI QPEFANHPLL CDQGSSS

Type	Start	End	Confidence
Cytoplasmic	1	9	0.94
Transmembrane Helix	10	31	0.93
Non-Cytoplasmic	32	40	0.74
Transmembrane Helix	41	59	0.91
Cytoplasmic	60	77	0.89
Transmembrane Helix	78	100	0.90
Non-Cytoplasmic	101	112	0.90
Transmembrane Helix	113	134	0.92
Cytoplasmic	135	231	0.98
Transmembrane Helix	232	254	0.93
Non-Cytoplasmic	255	262	0.86
Transmembrane Helix	263	285	0.84
Cytoplasmic	286	387	0.95