YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CSH3_SCHPO
Protein type:	Transmembrane
Type Confidence:	0.63
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDHKNYLNHV IRGIYNDFQF LVDEGVVERS ALDWVHANIH LQDGPASPVT APAAQPVESS  60
   61 VPLPLPKRKS SVEKRAGSVA SAVAAMSLSQ NSGEKRTPEE PRKLPGVPAP QKQSEASSVN 120
  121 SSTEKLPPPP SYPGPNTAHK NVERVLAMYD FPGPDAGDLG FHAGEVIIVL EHVNNDWWRG 180
  181 ELNGKEGIFP SNYVRLLEDS AVKAQPPPPP PQQNYPPAAS SSAPPMQYQQ TAYPPQQAPY 240
  241 PPVQAYPQAP QQPIVVAQPT EHKHSSTFKK IGSGLGSAFV FGAGATAGAD LVNSIF

Type	Start	End	Confidence
Cytoplasmic	1	270	0.53
Transmembrane Helix	271	289	0.59
Non-Cytoplasmic	290	296	0.75