YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YBA9_SCHPO
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSSSSRRRS SSLVTKVPKP TIDDRLDQGS ATNYNSNWVN YKGAWVIHIV LIAALRLIFH  60
   61 AIPSVSRELA WTLTNLTYMA GSFIMFHWVT GTPFEFNGGA YDRLTMWEQL DEGNQYTPAR 120
  121 KYLLVLPIIL FLMSTHYTHY NGWMFLVNIW ALFMVLIPKL PAVHRKRIFG IQKLSLRDDD 180
  181 NDSIPR

Type	Start	End	Confidence
Non-Cytoplasmic	1	43	0.80
Transmembrane Helix	44	60	0.95
Cytoplasmic	61	68	0.73
Transmembrane Helix	69	91	0.85
Non-Cytoplasmic	92	139	0.82
Transmembrane Helix	140	163	0.82
Cytoplasmic	164	186	0.98