YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPCC16A11.01
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDNDYTTSTT TSRRPRFWGF FFILFPLVSF LMWTIGLIVL LGLWSTQDKW HTPSEPDPVY  60
   61 LSDMGAYTKG FFIPMCVITG VFYFLTFIMI RLARQWGWIY PTGRKVETYL GWFAALTGAA 120
  121 AASCLISLSI RDDVHHDNVH WKFTAAFVVL AFVSAASNIF EWLSATRYYP QSSLLRVSFI 180
  181 FKFVIIVVGI ICAIAFGGLH HNYRGRSARF EWVVCFLWSI YICLLCLDLA PALFYDSLAS 240
  241 APDLEKGAYA TSVPESYVAP MEPPAAVLPD GEERYATPDL VPDTTAQYPY ASATEPGVSN 300
  301 IPETRPERPV VYNMDVSQTT TTTRPVLA

Type	Start	End	Confidence
Cytoplasmic	1	19	0.92
Transmembrane Helix	20	43	0.92
Non-Cytoplasmic	44	69	0.91
Transmembrane Helix	70	90	0.94
Cytoplasmic	91	108	0.91
Transmembrane Helix	109	130	0.95
Non-Cytoplasmic	131	142	0.81
Transmembrane Helix	143	163	0.90
Cytoplasmic	164	178	0.86
Transmembrane Helix	179	200	0.94
Non-Cytoplasmic	201	213	0.76
Transmembrane Helix	214	235	0.82
Cytoplasmic	236	328	0.93