YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPCC1795.02c
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	56	0.92
Transmembrane Helix	57	78	0.87
Non-Cytoplasmic	79	84	0.78
Transmembrane Helix	85	104	0.94
Cytoplasmic	105	114	0.74
Transmembrane Helix	115	136	0.89
Non-Cytoplasmic	137	146	0.78
Transmembrane Helix	147	169	0.88
Cytoplasmic	170	177	0.84
Transmembrane Helix	178	201	0.86
Non-Cytoplasmic	202	215	0.86
Transmembrane Helix	216	238	0.88
Cytoplasmic	239	258	0.95
Transmembrane Helix	259	284	0.79
Non-Cytoplasmic	285	299	0.83
Transmembrane Helix	300	321	0.75
Cytoplasmic	322	329	0.69
Transmembrane Helix	330	355	0.86
Non-Cytoplasmic	356	361	0.65
Transmembrane Helix	362	383	0.83
Cytoplasmic	384	389	0.65
Transmembrane Helix	390	410	0.91
Non-Cytoplasmic	411	412	0.63

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIERLKIAKN RLEAMNSFNF PAQDRHERAP LLGSEYDHSM ARQLSLLNVV GMTKSVLMSS  60
   61 YFNLMLVFVP IGLIAGWFEW NAKSVFILNM LAIIPLASLL SFATEQLSII SGPTLGALLN 120
  121 ASFGNAIELI VGVLALKRGE LRIVQSSLLG SILSNLLLVF GMCLVTTGIR REITTFNITV 180
  181 AQTMIAMLAL STATILIPAT FHYSLPDNAN SENALLHVSR GTAVIVLIVY VLLLVFQLKT 240
  241 HKHVCHDPSE VEEETEPRIL GLRSSIAMLA IVTVFVSLCA DYLVGSIDQL VEEVNISKTF 300
  301 VGLVILPVVG NAAEHVTAIV VSYRGQMDLA LGVAIGSSIQ IALFLAPFLV IVGWIISQPL 360
  361 TLYFESLETV ILFVSVFLVN YLIQDGATHW LEGVQLLALY AIVVLAFFYY PQ