YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	pmr1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.33
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	58	0.92
Transmembrane Helix	59	78	0.74
Non-Cytoplasmic	79	83	0.68
Transmembrane Helix	84	103	0.80
Cytoplasmic	104	247	0.98
Transmembrane Helix	248	267	0.93
Non-Cytoplasmic	268	279	0.81
Transmembrane Helix	280	302	0.91
Cytoplasmic	303	684	0.79
Transmembrane Helix	685	708	0.74
Non-Cytoplasmic	709	716	0.49
Transmembrane Helix	717	734	0.33
Cytoplasmic	735	757	0.67
Transmembrane Helix	758	779	0.89
Non-Cytoplasmic	780	790	0.56
Transmembrane Helix	791	809	0.70
Cytoplasmic	810	825	0.86
Transmembrane Helix	826	847	0.88
Non-Cytoplasmic	848	854	0.91
Transmembrane Helix	855	874	0.89
Cytoplasmic	875	899	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVQYDAFSV EQTCADLETD MYNGLSSLQE ITRRNKVHGD NDLKVEDEEN MVVQFLKQFV  60
   61 KDPLILLLFA SSAISVTLGN IDDAISIALA IVIVVTVGFV QEYRSEQSLK ALNNLVPHYC 120
  121 NVIRSGKTEH IVASKLVPGD LVILQIGDRV PADLRIVEAT ELEIDESNLT GENSPRKKSS 180
  181 EAISSNISLT ERNNIAFMGT LVRHGHGRGI VVATGSDTEF GRVFLTMQQT EKPKTPLQNS 240
  241 MDDLGKQLSL ISLIGIAVIV LVGFFQGKNW LEMLTIGVSL AVAAIPEGLP IIVTVTLALG 300
  301 VLRMSKKRAI IRRLPSVETL GSVNVICSDK TGTLTMNHMT VTKIYTCGML AAFSLPESEH 360
  361 IELSVRRTVG IEKALLAAAL CNNSKVHNKA DSILDTTCPW AGFPVDVALI ECSERFGLKD 420
  421 PRETYSRISE VSFSSERKYM SVAVQYNSSK MNFMKGATEQ VLSSCAYFSD QDGVQHELTA 480
  481 EMKENIQRNE FEMAASGLRI IAVASGINTN KLVFHGLFGI NDPPRPQVRE SVQYLMTGGV 540
  541 RVIMITGDSV VTAISIARSL GMAIPSNDEE AIRNYALTGA QLDDLDSSSL RDAVSRVVVF 600
  601 ARTTPQHKMK IVEALQSLGD VVAMTGDGVN DAPALKLADI GIAMGRQGTD VAKEAADMIL 660
  661 TDDSFATILS AVEEGKGIFN NIKNFITFQL STSVAALSLI AISSVFGFQN PLNAMQILWI 720
  721 NILMDGPPAQ SLGVESVDED VMMKPPRPRN APIISVQLLQ RVLLSAFIIV TVTIVVFRVQ 780
  781 MQDGNVTARD TTMTFTCFVF FDMFNALACR SETKSVFKLG IFSNRMFNIA VGGSLIGQAL 840
  841 VVYASPFQRI FQTEAIGLKD VLILLACTSS VLWVDEIRKW YRRRKGLVRT KSNYLLRNV