YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPBC16D10.06
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLNNLSNSY NQYLAQESHQ ILRHLFLNKQ YSPLVKRDDD SSATVTCGGD ANEFNEYGHL  60
   61 GYRIGAIFVI LATSLIGMNL PLVLSKITKN RPNVYIEYLY LFARYFGSGV ILATAFIHLL 120
  121 APACNKLYDP CLDDLFGGYD WAPGICLISC WFILLLEVLL NRYVEWRFGM EIGDHHGPTL 180
  181 GAKQHSHSHE DGAHGVHEHP VYDIEECADG VEHECVKDDL EEVKLEPYTN TDSTDLTTKE 240
  241 EARSFLLKQQ LTAFIILESS IILHSVIIGL TTAVSGEEFK TLFPVIIFHQ AFEGCGLGSR 300
  301 LAGMAWGPKT AWVPWVLGVI YSLVTPIGMA AGLGVREHWD PLAHGSYAAQ GVLDAISSGI 360
  361 LVYAGLVELL AHDFLFSPER ERNWYKLIYL LACSMAGTGV MALLGKWA

Type	Start	End	Confidence
Non-Cytoplasmic	1	63	0.96
Transmembrane Helix	64	84	0.92
Cytoplasmic	85	100	0.90
Transmembrane Helix	101	121	0.94
Non-Cytoplasmic	122	140	0.89
Transmembrane Helix	141	160	0.96
Cytoplasmic	161	250	0.98
Transmembrane Helix	251	274	0.86
Non-Cytoplasmic	275	281	0.84
Transmembrane Helix	282	303	0.81
Cytoplasmic	304	311	0.80
Transmembrane Helix	312	334	0.92
Non-Cytoplasmic	335	350	0.80
Transmembrane Helix	351	372	0.83
Cytoplasmic	373	384	0.77
Transmembrane Helix	385	405	0.93
Non-Cytoplasmic	406	408	0.78