YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	vma11
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSNLCPIYS SFFGFAGVCA SMVFSCLGAG YGTALAGRGI AAVGAFRPEI VMKSLIPVVM  60
   61 SGIIGVYGLV MSVLIAGDMS PDNDYSLFSG FIHLSAGLAV GLTGVAAGYA IGVVGDRGVQ 120
  121 SFMRQDRIFV SMVLILIFAE VLGLYGLIVG LILQTKTSNV CY

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.89
Transmembrane Helix	12	35	0.90
Cytoplasmic	36	54	0.83
Transmembrane Helix	55	76	0.93
Non-Cytoplasmic	77	90	0.87
Transmembrane Helix	91	113	0.92
Cytoplasmic	114	127	0.88
Transmembrane Helix	128	152	0.87
Non-Cytoplasmic	153	162	0.91