YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	emp24
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.46
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFFNVFKAV LCAYFISVVF GHGITLKPHQ RECFYENLRN NDQMSVTYQT NVGGDQLVSM  60
   61 SIYNPAGQIM HQEVPNSMAQ YSFTVKNPGK YMYCFYNDAL DGESKEVLFN VHGVIYISDE 120
  121 DLDANNPLLG KVRQLHDTIS KVKHEQEYFV ARERIHRNTA ESTNDRVKWW SILQTVILVS 180
  181 VCVFQIFYLK RLFEVKRVV

Type	Start	End	Confidence
Signal Peptide	1	21	0.61
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	168	0.82
Transmembrane Helix	169	189	0.74
Cytoplasmic	190	199	0.61