YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	amt3
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	32	0.94
Transmembrane Helix	33	56	0.92
Cytoplasmic	57	65	0.84
Transmembrane Helix	66	90	0.73
Non-Cytoplasmic	91	117	0.80
Transmembrane Helix	118	140	0.88
Cytoplasmic	141	148	0.86
Transmembrane Helix	149	170	0.91
Non-Cytoplasmic	171	188	0.77
Transmembrane Helix	189	208	0.85
Cytoplasmic	209	269	0.95
Transmembrane Helix	270	292	0.86
Non-Cytoplasmic	293	299	0.77
Transmembrane Helix	300	320	0.94
Cytoplasmic	321	327	0.86
Transmembrane Helix	328	348	0.88
Non-Cytoplasmic	349	353	0.61
Transmembrane Helix	354	373	0.87
Cytoplasmic	374	384	0.83
Transmembrane Helix	385	405	0.91
Non-Cytoplasmic	406	432	0.89
Transmembrane Helix	433	457	0.84
Cytoplasmic	458	517	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNEPNALLR RDANSTIATV TELFPNEYSN ADIAYVLLST VVVFTVTPGI ALYYAGMVRK  60
   61 NSALSILTQS FLVTAVVFIQ WYLFGYSLAC SSGSSFYGTL WQGGMNHLWL EPYIPGSTIP 120
  121 AIVYFPFGGL FAVATAQLFA GAMAERGRLI PSLVISFLYI TLVYCPQAYW TWAPNGWLYT 180
  181 LGALDFAGGG PVHISSGFAA LAYSLCLGRR IVVDEPDRPD SIRSTDNADL PSSSQNNCKA 240
  241 NWKRWFGFKS VSWKNSFGRG KIAHNPPHDA GMVYIGVVLI WFAWLCFNSG TLLTVNIRTA 300
  301 YIMTNTLISS SFGALTWAII DYIRYRKFST IGICEGAIAG LVGITPACGF VFPWGAAAGG 360
  361 IVPALVCNFL HDLNEWIGVD ETLRVFNLHG IGGIVGSIVL GVVAHPDVAA SDGATVIDGG 420
  421 WAVHHWKQMG YQFAGFTSVA AWSFVITAII CLLVDLVPGL HIRASFEEEL RGMDFVELEE 480
  481 QLPGQTLESK PMIIYAQEMD EPVTQGSNIK QEKQDEF