YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	amt2
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.71
Transmembrane Helix	9	28	0.70
Non-Cytoplasmic	29	47	0.86
Transmembrane Helix	48	69	0.94
Cytoplasmic	70	77	0.82
Transmembrane Helix	78	98	0.95
Non-Cytoplasmic	99	137	0.97
Transmembrane Helix	138	159	0.91
Cytoplasmic	160	167	0.83
Transmembrane Helix	168	188	0.94
Non-Cytoplasmic	189	201	0.86
Transmembrane Helix	202	223	0.90
Cytoplasmic	224	236	0.87
Transmembrane Helix	237	256	0.91
Non-Cytoplasmic	257	267	0.80
Transmembrane Helix	268	289	0.92
Cytoplasmic	290	297	0.84
Transmembrane Helix	298	318	0.91
Non-Cytoplasmic	319	323	0.70
Transmembrane Helix	324	343	0.91
Cytoplasmic	344	354	0.91
Transmembrane Helix	355	375	0.94
Non-Cytoplasmic	376	404	0.90
Transmembrane Helix	405	427	0.95
Cytoplasmic	428	512	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSVNSIPTA TSTVYISVLP ATATPSGGSG GNVLHEDLNK FYDYGNTSWI LACTPLCLIM  60
   61 VPGVAFFYSG LARRKNTLAL IMLSMLGLCV SFFQWYFWGY SLAFSQTGTS GYIGNLRHFA 120
  121 FIRTLADYSP GSNNIPELVF ANFQGMFAAI TVALFTGAAA ERGRIGPMLI ITFVWLTVVY 180
  181 CPIACWIWNP NGWAFKFGVY DFAGGGPVEV GSGFAALAYT VCLGRRSKFV EEQFRPHSVL 240
  241 NVVLGTSLLW FGWLGFNGGS AYGSNLRAAM AITNTNLAGA VAGLVWVIYD YIFRTRKWST 300
  301 IGFCSGVVAG LVAATPCAGF VSPHASLAIG AITGLCCNWA IKLKSHMRID DAMDIFAIHG 360
  361 VAGFVGTFLN GLFAVDYIAA MDGIYVGENK IRGGWFDHHW RQLGLQMAYI CAVGAYDFVV 420
  421 TFIILFITDK IPYLQLRVSP DAEEIGVDAD QIGEYAFDYI EERREYKHWK ISPAGVPEEI 480
  481 IISNGVAQPT GNVAAPGKIL ESTNPLELGL TI