YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	vph2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKELRLHNR NINFLEFLRG VQIVPSDSVF LGEIDENSHT QDNTTTSILK EKELYDGIPL  60
   61 LPSMAGVSMD PEREKKSELR LMKNQISAII NILFTVVGTV TAVWYCTSSL SIEKKIALCA 120
  121 FSAILVLVAD TFLYVRYLSA QPVRTSKNHT RQIIYTWTTN DPVLQSNEQL AIELGAIPSL 180
  181 KEKKNQ

Type	Start	End	Confidence
Cytoplasmic	1	85	0.93
Transmembrane Helix	86	107	0.91
Non-Cytoplasmic	108	115	0.79
Transmembrane Helix	116	138	0.88
Cytoplasmic	139	186	0.91