YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DGK1_SCHPO
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTKLTWSQW SKKHEIPRKA LHTSIGFFAL LLQGCGYHAA QIIPVIEIGF IPAFTGDVIR  60
   61 FNWPAFSRLY NRVIGPLMRE SEKNAWNGVI FYMIGVWIVL KVFPEEIAVM SVLLLSWCDT 120
  121 TASTVGRKWG KYTPKIAKNK SLAGSLGAFV CGVFCCYVYW GLFRTGPDSL AAQSRIPFPW 180
  181 LCLINGFIGA FAEAMDVWGL DDNLVIPVVS ACLLYLIM

Type	Start	End	Confidence
Cytoplasmic	1	19	0.97
Transmembrane Helix	20	40	0.92
Non-Cytoplasmic	41	45	0.70
Transmembrane Helix	46	64	0.83
Cytoplasmic	65	83	0.83
Transmembrane Helix	84	103	0.86
Non-Cytoplasmic	104	106	0.73
Transmembrane Helix	107	126	0.51
Cytoplasmic	127	141	0.49
Transmembrane Helix	142	163	0.93
Non-Cytoplasmic	164	175	0.50
Transmembrane Helix	176	195	0.70
Cytoplasmic	196	196	0.25
Transmembrane Helix	197	217	0.45
Non-Cytoplasmic	218	218	0.43