YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPAC823.13c
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQRLSQSIK GFAARFPKIY NKGNGSVQQT ILQASQRLNE LTGYSSIEAL KNAVVKQETK  60
   61 LRDFRLSAAE ARKRYIEAVE KRSSSQREVN ELLQRRSSWS TIDLERFTKL YRDDYSNKEE 120
  121 EIKAQEDVDV AERRVEEAQN GLVRSILSRY HEEQVWSDKI RQASTWGTWG LMGINVVLFV 180
  181 VVQLILEPRK RKRLVREAVD HIDKERELEI NDELKKISEK LDKKGEAVGQ ALELTSPKID 240
  241 NKNLPKNSAS LILPPINYDT FHSFLDSLKY FLSRFLSTDY RIQLTYRQLS ILATKFTVGG 300
  301 GVIIYTFIHL FGLAFKR

Type	Start	End	Confidence
Non-Cytoplasmic	1	165	0.93
Transmembrane Helix	166	186	0.94
Cytoplasmic	187	290	0.91
Transmembrane Helix	291	313	0.89
Non-Cytoplasmic	314	317	0.79