YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MUG33_SCHPO
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRIRSATPSL ILLVIAIVFF VLAICTPPLA NNLTLGKYGD VRFGVFGYCL NSNCSKPLVG  60
   61 YNSDYLDEHA KDGFRTSVIV RQRASYGLVI VPVSACICLI STIMTIFAHI GAIARSPGFF 120
  121 NVIGTITFFN IFITAIAFVI CVITFVPHIQ WPSWLVLANV GIQLIVLLLL LVARRQATRL 180
  181 QAKHLRRATS GSLGYNPYSL QNSSNIFSTS SRKGDLPKFS DYSAEKPMYD TISEDDGLKR 240
  241 GGSVSKLKPT FSNDSRSLSS YAPTVREPVP VPKSNSGFRF PFMRNKPAEQ APENPFRDPE 300
  301 NPFKDPASAP APNPWSINDV QANNDKKPSR FSWGRS

Type	Start	End	Confidence
Cytoplasmic	1	8	0.78
Transmembrane Helix	9	30	0.78
Non-Cytoplasmic	31	87	0.96
Transmembrane Helix	88	110	0.92
Cytoplasmic	111	121	0.78
Transmembrane Helix	122	146	0.87
Non-Cytoplasmic	147	153	0.74
Transmembrane Helix	154	173	0.95
Cytoplasmic	174	336	0.97