YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPBC36.03c
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	99	0.98
Transmembrane Helix	100	123	0.85
Non-Cytoplasmic	124	131	0.69
Transmembrane Helix	132	154	0.90
Cytoplasmic	155	163	0.83
Transmembrane Helix	164	183	0.95
Non-Cytoplasmic	184	190	0.83
Transmembrane Helix	191	212	0.93
Cytoplasmic	213	222	0.82
Transmembrane Helix	223	245	0.92
Non-Cytoplasmic	246	253	0.83
Transmembrane Helix	254	273	0.91
Cytoplasmic	274	318	0.94
Transmembrane Helix	319	343	0.84
Non-Cytoplasmic	344	367	0.90
Transmembrane Helix	368	390	0.90
Cytoplasmic	391	407	0.94
Transmembrane Helix	408	428	0.92
Non-Cytoplasmic	429	435	0.76
Transmembrane Helix	436	460	0.83
Cytoplasmic	461	471	0.66
Transmembrane Helix	472	492	0.84
Non-Cytoplasmic	493	501	0.73
Transmembrane Helix	502	524	0.93
Cytoplasmic	525	538	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYNNNSSTSS DSSNSEEKAN AQHASSTDST SEHTDPAVAD EGFPAEQYQS ADLEKQQLLI  60
   61 EEGPGGFPYI TNPERFYVSL EPSDPRLAVN WPTHVKILHV ALLAFTTLTA SWGSSVFSAA 120
  121 ATIFAAKYHI GLTVALLGMS LYVCGFASGP ILWAPISELV GRKIPLIVGM FMFSIFSIAV 180
  181 AVAKDVQTVM ICRFFSGFCA SSPLSVVAAA FADMFDNKTR GPAVCIFACI TFAGPLIGPI 240
  241 AGGFLAKSYL GWRWTEYITS FMGFFSTLCL LFMKECYSRT ITEQEAARLR VEYNNNFIRA 300
  301 KSEEEYIDFK ALAKRYLAVP FVLLFCEPIV FLLTLYMSFV YGILYLLLEA YPIIFAEKRH 360
  361 FSLGVDALPY IGLLVGVILG AALIAYFQGY YNRKLDANGG KPVPEARLPP MMIGSVLFPA 420
  421 GIFWLAWSGY YTHVHWIVPT LSGLLTGCGI LTIFMQSLIY LIDAYLFRAA SVIAANTIMR 480
  481 SLVAAGFPLF AVQMFHNMGI GWAGSLLGFI ATALIPIPTL FFIFGKRIRL MSKNTVNL