YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	mug142
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYEKHSDAK ASRYAWNQPW NPFEVTLSDP TYPMNLEEKN QIPYRFQSVP DDVPEVPHIE  60
   61 SRYKNLPGNN IYLCCGRLQM SSQYKAFLIS LFALILPGVL FFIFSAFWLW HHVSPAVPIT 120
  121 FAYLYALAVV SMFKCSTADP GILPRNAYSL TYNPAHPWSV IPEDRKVLVG STRSDSVFVN 180
  181 TVYCHTCHLY RPPRASHCHL CDNCVEYLDH HCIWLNTCIG RRNYRYYFIF LLSVVLSALY 240
  241 LTGLGFYTSI GSFHESTDTN FAAHLRRPWA GVSFFLGIYG ALGAILPGIL FCYQCYLISV 300
  301 GQNVHEYLRA KSTETEDVHP FHDSIWLNFL VVLCRPKNVS YVRPTRKSYV

Type	Start	End	Confidence
Cytoplasmic	1	86	0.99
Transmembrane Helix	87	109	0.94
Non-Cytoplasmic	110	115	0.78
Transmembrane Helix	116	137	0.87
Cytoplasmic	138	225	0.98
Transmembrane Helix	226	247	0.91
Non-Cytoplasmic	248	271	0.89
Transmembrane Helix	272	293	0.87
Cytoplasmic	294	350	0.94