YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DS1PP_SCHPO
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	66	0.96
Transmembrane Helix	67	90	0.87
Non-Cytoplasmic	91	99	0.71
Transmembrane Helix	100	119	0.66
Cytoplasmic	120	140	0.67
Transmembrane Helix	141	163	0.66
Non-Cytoplasmic	164	171	0.60
Transmembrane Helix	172	191	0.89
Cytoplasmic	192	198	0.57
Transmembrane Helix	199	218	0.81
Non-Cytoplasmic	219	227	0.73
Transmembrane Helix	228	249	0.91
Cytoplasmic	250	257	0.82
Transmembrane Helix	258	280	0.84
Non-Cytoplasmic	281	294	0.85
Transmembrane Helix	295	317	0.85
Cytoplasmic	318	387	0.87
Transmembrane Helix	388	407	0.68
Non-Cytoplasmic	408	411	0.64

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVHKKKNVDI PSSQKYLGIQ HVNFYSNAFG KESLRFQLRE LILPIVRKET RLLYKIQSFF  60
   61 RNPWLDVYFM YTATLGTHVF FMLALPIFFW SGCIYYTLDI TQLFAAGVYF SGCIKDYFCL 120
  121 PRPRSPPMVR LTLSSDAEYE YGFPSTHTTN AMATGFYSLF LLLSMSDSMS SISYYFLLSL 180
  181 VLLYIASISL GRIYCGMHGF MDVSTGTILG VTLAIFQWKY ADFFHNVWSS SSTSVPILSV 240
  241 VLALFFIWFH PQPAERCICL EDSISFISVI MGIDLGTWFA SPESLSHLHD NLNSYFLLKF 300
  301 FVRVLFGVCM ILIWKSFAKQ ALLAVLPPIF KSLRLSYLEP KSQSEKGIRA ATGSNHSPGN 360
  361 IGTELGVITS HQSHPHPVRF DIETIARIIV YSGIGFLCTY FAPKVFLKWK I