YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPAC29B12.10c
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	155	0.79
Transmembrane Helix	156	175	0.86
Non-Cytoplasmic	176	180	0.58
Transmembrane Helix	181	201	0.85
Cytoplasmic	202	225	0.64
Transmembrane Helix	226	246	0.70
Non-Cytoplasmic	247	258	0.48
Transmembrane Helix	259	280	0.82
Cytoplasmic	281	331	0.42
Transmembrane Helix	332	355	0.77
Non-Cytoplasmic	356	373	0.50
Transmembrane Helix	374	393	0.66
Cytoplasmic	394	403	0.52
Transmembrane Helix	404	427	0.87
Non-Cytoplasmic	428	479	0.65
Transmembrane Helix	480	501	0.86
Cytoplasmic	502	531	0.73
Transmembrane Helix	532	553	0.89
Non-Cytoplasmic	554	559	0.59
Transmembrane Helix	560	580	0.90
Cytoplasmic	581	641	0.72
Transmembrane Helix	642	661	0.92
Non-Cytoplasmic	662	687	0.74
Transmembrane Helix	688	705	0.44
Cytoplasmic	706	710	0.60
Transmembrane Helix	711	731	0.93
Non-Cytoplasmic	732	754	0.65
Transmembrane Helix	755	777	0.75
Cytoplasmic	778	789	0.79
Transmembrane Helix	790	812	0.89
Non-Cytoplasmic	813	851	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTARNSASIP TSIRKTSENE VSGDETPAGV GNLSTKTASK TSLTFRQSSS DESTSSYSGN  60
   61 HHNINIQHHP NRPFRTNSSS FSPNDYSISE SPSKSKKDGV HVSAVQLDNE TDSEVESEVE 120
  121 ELERELEAIE DSVYPEVRAA VNPTDDVNLP VNTWRTWVLT TIFVIVFAAV NQFFSLRYPA 180
  181 LSISFIVAQL ILFPLGKLLN LLPNWKIGYG RFSFYLNSSP FNVKEHAAIT IAVSLTSSTA 240
  241 YATNILSAQT SFYKQNLSWG YKILIVLTSQ MLGYGFAGLT RRWIVYPAAM IWPQTLVSTV 300
  301 LFRTLHGNSG NDIGVLKNNR ISANGWTISR YRFFAYVMIG SFVFYWFPGF IFKGLSYFTV 360
  361 LCWIWPKNRV VNQLFGYNSG LGILPLTFDW QQVVYNSNPL ASPWWVICNT FGSVVLIFWI 420
  421 VVPILYYKGV WFSNYLPMLS SSTFDHTGVS YNSSRVLNSD YSFNHTKYES YSPLYMPMSY 480
  481 SMSTALNFAA VTAIFTHCAL YNGKDIWQRL WKESGKDECI HRKLMRNYKE APQWWYATLF 540
  541 IVVFGLTIFT VRYYDTQCPV WALIVALLIF IVNFIPQGVL EGITNQHVGL NIITELIGGY 600
  601 ILPGKPLANL MIKLYGFIPM RQGLEFSRDL KLAQYMKIPP RILFFVQLFA TILGGITQVA 660
  661 VQEWMNYHIP GICTTSQSNG FTCPNGRSIY NASLIWGAIG PAKMFSKGKP YYPLIFFFLI 720
  721 GAVAPFITWG LRKRFPKSWI GKLNAPVLFT GPGNIPPATG INYSSWAIVG FIFNYVIRKR 780
  781 AIHWWRKYNY VLAAAMDSGV AVAGVVIFLC VSYPGGKITW WGNTVYTKTY DWKSVPYRSL 840
  841 GPNETFGYTN W